fusion step
Cancer Subtype Identification through Integrating Inter and Intra Dataset Relationships in Multi-Omics Data
Peelen, Mark, Bagheriye, Leila, Kwisthout, Johan
The integration of multi-omics data has emerged as a promising approach for gaining comprehensive insights into complex diseases such as cancer. This paper proposes a novel approach to identify cancer subtypes through the integration of multi-omics data for clustering. The proposed method, named LIDAF utilises affinity matrices based on linear relationships between and within different omics datasets (Linear Inter and Intra Dataset Affinity Fusion (LIDAF)). Canonical Correlation Analysis is in this paper employed to create distance matrices based on Euclidean distances between canonical variates. The distance matrices are converted to affinity matrices and those are fused in a three-step process. The proposed LIDAF addresses the limitations of the existing method resulting in improvement of clustering performance as measured by the Adjusted Rand Index and the Normalized Mutual Information score. Moreover, our proposed LIDAF approach demonstrates a notable enhancement in 50% of the log10 rank p-values obtained from Cox survival analysis, surpassing the performance of the best reported method, highlighting its potential of identifying distinct cancer subtypes.
Towards a Robust Sensor Fusion Step for 3D Object Detection on Corrupted Data
Wozniak, Maciej K., Karefjards, Viktor, Thiel, Marko, Jensfelt, Patric
Multimodal sensor fusion methods for 3D object detection have been revolutionizing the autonomous driving research field. Nevertheless, most of these methods heavily rely on dense LiDAR data and accurately calibrated sensors which is often not the case in real-world scenarios. Data from LiDAR and cameras often come misaligned due to the miscalibration, decalibration, or different frequencies of the sensors. Additionally, some parts of the LiDAR data may be occluded and parts of the data may be missing due to hardware malfunction or weather conditions. This work presents a novel fusion step that addresses data corruptions and makes sensor fusion for 3D object detection more robust. Through extensive experiments, we demonstrate that our method performs on par with state-of-the-art approaches on normal data and outperforms them on misaligned data.
Learning big Gaussian Bayesian networks: partition, estimation, and fusion
Structure learning of Bayesian networks has always been a challenging problem. Nowadays, massive-size networks with thousands or more of nodes but fewer samples frequently appear in many areas. We develop a divide-and-conquer framework, called partition-estimation-fusion (PEF), for structure learning of such big networks. The proposed method first partitions nodes into clusters, then learns a subgraph on each cluster of nodes, and finally fuses all learned subgraphs into one Bayesian network. The PEF method is designed in a flexible way so that any structure learning method may be used in the second step to learn a subgraph structure as either a DAG or a CPDAG. In the clustering step, we adapt the hierarchical clustering method to automatically choose a proper number of clusters. In the fusion step, we propose a novel hybrid method that sequentially add edges between subgraphs. Extensive numerical experiments demonstrate the competitive performance of our PEF method, in terms of both speed and accuracy compared to existing methods. Our method can improve the accuracy of structure learning by 20% or more, while reducing running time up to two orders-of-magnitude.